Conservation biology is an integrative discipline that encompasses aspects of evolution, ecology and population biology to understand conservation-related issues in a changing world. Students will learn how genetic, physiological, behavioral, ecological and anthropogenic factors influence population dynamics, and how management practices can ameliorate impacts on biodiversity. BIOL 106 is appropriate for first-year students and can count toward the core course requirement for the environmental studies concentration. This course does not count toward the major or minor. No prerequisite.
Fossils fascinate and educate. This course explores the history of paleobiology from when fossils were first recognized as evidence of ancient life forms to the present day, when modern techniques allow us to determine details such as the color, sex and running speed of an animal that died tens of millions of years ago. Our investigation includes the clues fossils might hold to how the former organisms they represent lived and died – a sort of “Jurassic CSI.” We explore the use of fossils as tools for interpreting the environments in which ancient organisms lived, and survey certain exceptional fossil finds that reveal evidence of interactions between individuals (e.g., predation, escapes from predation and parasitism). As new fossil finds regularly generate headlines across the globe, time is set aside for evaluation of recent discoveries in light of the concepts learned in the course. If your news feed commonly includes stories about bone beds, mass extinctions, dinosaurs and whales with legs, then this course will be of interest to you. No prerequisite.
This is the first laboratory course a student takes and is a prerequisite for all upper-division laboratory courses. Students are introduced to the processes of investigative biology and scientific writing. It is not designed to accompany any particular core lecture course. Laboratories cover topics presented in the core lecture courses, BIOL 115 and 116, and introduce a variety of techniques and topics, including field sampling, microscopy, PCR, gel electrophoresis, enzyme biochemistry, physiology, evolution and population biology. The course emphasizes the development of inquiry skills through active involvement in experimental design, data collection and management, statistical analysis, integration of results with information reported in the literature, and writing in a format appropriate for publication. The year culminates in six-week student-designed investigations that reinforce the research skills developed during the year. Evaluation is based on laboratory notebooks, lab performance, and scientific papers, as well as oral and written presentations summarizing the independent project. Enrollment is limited to 16 students in each section. Students enrolled in this course will be automatically added to BIOL 110Y for the spring semester. Prerequisite: completion or concurrent enrollment in BIOL 115 or equivalent. Required for the major.
This is the first laboratory course a student takes and is a prerequisite for all upper-division laboratory courses. Students are introduced to the processes of investigative biology and scientific writing. It is not designed to accompany any particular core lecture course. Laboratories cover topics presented in the core lecture courses, BIOL 115 and 116, and introduce a variety of techniques and topics, including field sampling, microscopy, PCR, gel electrophoresis, enzyme biochemistry, physiology, evolution and population biology. The course emphasizes the development of inquiry skills through active involvement in experimental design, data collection, statistical analysis, integration of results with information reported in the literature and writing in a format appropriate for publication. The year culminates in six-week student-designed investigations that reinforce the research skills developed during the year. Evaluation is based on short reports, quizzes, lab performance and scientific papers, as well as oral and written presentations based on the independent project. Enrollment is limited to 16 students in each section. Prerequisite: completion or concurrent enrollment in BIOL 115 or equivalent. Required for the major.
Energy flow is a unifying principle across a range of living systems, from cells to ecosystems. With energy flow as a major theme, this course covers macromolecules, cells, respiration and photosynthesis, physiology and homeostasis, population and community interactions, and ecosystems. Throughout the course, the diversity of life is explored. The course also introduces students to the process of scientific thinking through discussion of research methodology and approaches. This course is required for the major (although AP or IB credit can be applied) and as such, biology majors should take this class prior to the junior year. No prerequisite. Offered every year.
How is information generated, transmitted, stored and maintained in biological systems? The endeavor to understand the flow of biological information represents a fundamental undertaking of the life sciences. This course examines the mechanisms of heredity, the replication and expression of genetic information and the function of genes in the process of evolution, with an emphasis on the tools of genetics and molecular biology to address research questions in these areas. This course is required for the major and as such, biology majors should take this class prior to the junior year. Prerequisite: BIOL 115, permission of instructor, or equivalent. Offered every year.
Students volunteer weekly at Knox Community Hospital, College Township Fire Department, or another designated health provider. We study health research topics including articles from biomedical journals. The academic portion of the class will meet as a three-hour seminar. Students read and critique articles on topics such as: diabetes in the community; pain-killers and drug addiction; AIDS and STIs; influenza transmission; and socioeconomic status and health disparities. Outside of class, students will have four hours/week reading, and a minimum of four hours/week service. Student assignments will include keeping a journal on their service and class presentations related to the reading and their service. This counts toward the upper-level organismal biology/physiology requirement for the major. Prerequisite: one year of biology or chemistry and permission of instructor.
Ecology is the study of the distribution and abundance of organisms and the structure and dynamics of the biosphere. Topics will include physiological ecology, population ecology, competition, predator-prey systems, mutualism, succession, energy and nutrient dynamics, and the ecology of communities, ecosystems and the biosphere. We also will explore the influence of humans on natural systems. Students will use theoretical models and primary literature to supplement the text, lectures and discussions. Co-enrollment in BIOL 229 is highly recommended. This counts toward the upper-level environmental biology requirement for the biology major and as an elective for the environmental studies major. Prerequisite: BIOL 115 or equivalent or permission of instructor.
This course examines techniques for studying ecological principles in the field and laboratory, with primary emphasis on terrestrial systems. Students will learn experimental design, sampling protocols and quantitative methods including spatial analysis with geographic information systems. Topics may include limits to distribution, interactions with the physical environment, population dynamics, species interactions, carbon sequestration and biodiversity. Studies will include physically demanding fieldwork in local habitats in varying weather conditions. This counts toward the upper-level laboratory requirement for the biology major and as an elective for the environmental studies major. Prerequisite: BIOL 109Y-110Y, BIOL 115, and completion or concurrent enrollment in BIOL 228 or permission of instructor.
This course will focus on the analysis of genomic and transcriptomic data obtained through next-generation sequencing technologies. Topics will include genome sequencing and assembly, polymorphism and variant analysis, population and evolutionary genomics, differential expression, co-expression networks and data visualization. Readings will largely be drawn from the primary literature, and will include a combination of methods articles and research articles that apply these methods to address biological questions. Students will carry out their own analyses by applying these methods to available datasets. Programming will mainly be done in R and unix; familiarity with R is expected. This can count either as an upper-level course in cellular/molecular biology or as an upper-level laboratory, and also serves as an intermediate level course in scientific computing. Prerequisite: BIOL 116 and either BIOL 109-110Y or STAT 106, or permission of instructor. May be offered in alternating years.
Microbes inhabit the most extreme environments on earth, ranging from superheated sulfur vents on the ocean floor to alkaline soda lakes. In medicine, newly discovered bacteria and viruses cause a surprising range of diseases, including heart disease; they may even hold the key to human aging. Yet other species live symbiotically with us, keeping us healthy, and even regulate our brain. Still other microbes, such as nitrogen fixers, are essential to the entire biosphere. This course covers microbial cell structure and metabolism, genetics, nutrition and microbial communities in ecosystems, and the role of microbes in human health and disease. This can count toward the upper-level lecture in organismal biology/physiology or cellular/molecular requirements for the major. Prerequisite: BIOL 116.
In this course, students will learn the classic techniques of studying bacteria, protists and viruses in medical science and in ecology, and will practice microbial culture and examine life cycles, cell structure and metabolism and genetics. High-throughput methods of analysis are performed, such as use of the microplate UV-VIS spectrophotometer and whole-genome sequencing. For the final project, each student surveys the microbial community of a particular habitat, using DNA analysis and biochemical methods to identify microbial isolates. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y or a chemistry lab course and completion or concurrent enrollment in BIOL 238.
Evolution is the major unifying theory of biology. This course introduces the processes of evolution, most of which can be examined in contemporary time through experiment, theory, simulation and examination of patterns in nature. The class format will combine lecture, activities and discussions. Topics will include Darwinian natural selection, population genetics, adaptation, speciation, reconstructing phylogenetic history, macroevolution, sexual selection, and the consequences of evolution for conservation and human health. Examples will be drawn from all levels of biology, from molecular to ecological. Students will read, analyze and discuss primary literature in the evolutionary biology. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 116 or permission of instructor.
Animal physiology examines the processes of animal cells, tissues and organ systems. In this class, we will seek to understand how physiological processes relate to the survival of an animal in its environment. We will use three primary approaches: (1) comparative, contrasting animals that live in different environments; (2) environmental, exploring how animals survive in challenging environments; and (3) structure-function, examining how the anatomy of a system relates to its function. Each organ system (nerve, muscle, cardiovascular, respiratory, gastrointestinal, renal and excretory) will be covered in detail. Readings from the primary research literature will be assigned. Students complete a project in which they write about a physiology research paper for both scientific and general audiences. This counts toward the upper-level organismal biology/physiology requirement for the major. Prerequisite: BIOL 115, equivalent or permission of instructor.
This laboratory class explores the techniques, equipment and experimental designs common to animal physiology. Topics may include muscle physiology, cardiac physiology, salt and water balance, metabolism, and exercise physiology. A variety of experimental techniques will be used. Students will participate in experimental design, perform experiments and present results in oral and written form. Students also will read and analyze relevant papers from the primary literature. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y and completion of or concurrent enrollment in BIOL 243.
This course examines the physiological, anatomical and ecological adaptations that allow plants to survive in terrestrial environments. We explore how plants work, focusing on the diverse strategies that have evolved to fix atmospheric carbon into carbohydrate, anatomical structures that facilitate water movement across vast distances within the plant body, and ecological relationships that allow plants to obtain resources when constrained by a sessile lifestyle. Simultaneously, we explore how plants respond to key environmental drivers such as carbon dioxide, water, vapor pressure and temperature, and how these responses contribute to plant biogeography. Primary literature readings are assigned throughout the semester to examine current topics in depth. This counts toward the upper-level lecture in organismal biology/physiology requirement for the major. Prerequisite: BIOL 115 or equivalent. Generally offered every other year.
This course will examine techniques for investigating plant physiological responses to environmental stimuli in both laboratory and field settings. Students will learn methods to measure photosynthetic physiology using both instantaneous (gas exchange) and integrated approaches (stable isotope analysis). We also examine methods for assessing plant water status (water potential). Using these methods and an experimental approach, we will explore how environmental drivers affect plant carbon-water relations. While the focus of the course is on vascular plant physiology, we also examine the diversity of photosynthetic organisms through comparative studies with bryophytes, lichens and cyanobacteria. This counts toward the upper-level laboratory requirement. Prerequisite or corequisite: BIOL 109Y-110Yand 245 or 323.
This course will explore questions of how and why vertebrates came to be structured the way they are. We will use both comparative and functional approaches to study how the anatomy of vertebrates has evolved and diversified over hundreds of millions of years. We will examine how anatomy relates to function; for example, how do different musculoskeletal arrangements allow for different types of movement? We will investigate anatomical adaptations to a variety of environments to understand how different vertebrates have solved anatomical and biomechanical problems. Each of the primary vertebrate organ systems (integument, skeleton, muscle, cardiovascular, respiratory, gastrointestinal, urogenital, nervous) will be covered in detail. Students will read and analyze papers from the primary literature. This counts toward the upper-level organismal biology/physiology requirement for the major. Prerequisite: BIOL 116 and concurrent enrollment in BIOL 248. Generally offered every year.
This course is a hands-on exploration of the anatomy of vertebrates. Students will learn to identify major components of all of the primary vertebrate organ systems (integument, skeleton, muscle, cardiovascular, respiratory, gastrointestinal, urogenital and nervous). To understand patterns of vertebrate evolution, we will examine and compare specimens from all major vertebrate groups, including mammals, birds, cartilaginous fishes, ray-finned fishes, amphibians and non-avian reptiles, including extinct organisms. We will also perform experiments in biomechanics to understand how vertebrate form shapes function and movement. Dissections are required. Students will be tested via practical quizzes and exams. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 116 and concurrent enrollment in BIOL 247. Generally offered every year.
This course examines the use of fossils as tools for interpreting Earth's ancient oceans and the life they once supported. Methods for inferring physical and chemical aspects of marine settings (e.g., oxygen levels, salinity variation) and the use of major marine fossil taxa as past analogues of modern organisms, will allow for the reconstruction of paleoenvironments. We will explore techniques used to infer how organisms functioned within their life environments and how they interacted with other life forms, and we will survey major events in the history of Earth's oceans and marine biota, including some significant fossil locations (i.e., Lagerstätten), as a means of introducing major ecological principles. Laboratories and exercises involving fossil specimens will constitute a significant portion of the final grade, and at least one field trip will be required. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 116 or permission of instructor.
This course introduces both principles and experimental approaches related to heredity in a wide variety of organisms. Topics will include classical transmission genetics, chromosomal structure, extranuclear heredity, population and evolutionary genetics and molecular analysis of genes and chromosomes. As genetic analysis can be used to dissect many biological processes, we also will address how geneticists approach problems and advance scientific understanding, focusing our discussions around primary literature. This counts toward the upper-level cellular/molecular requirement for the major. Prerequisite: BIOL 116. Generally offered every year.
This laboratory course introduces both genetic concepts and genetic approaches commonly used to understand biological processes, including both forward and reverse genetic approaches. We will primarily use the model plant Physcomitrium patens as our experimental organism, although the techniques used in this course can be applied to any organism amenable to genetic analysis. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y and 116. Prerequisite or corequisite: BIOL 255.
This course is a general introduction to animal behavior. We will examine behavior within the framework of Tinbergen’s four areas of inquiry: causation (mechanisms), development, function and evolution (phylogeny) with an emphasis on behavioral ecology and the process by which questions in animal behavior are answered. An important part of class will be the reading and discussion of primary literature. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 115 or 116 or permission of instructor.
This course is an introduction to the study of animal behavior by observation and experimentation. Strong emphasis is placed on hypothesis formation, experimental design, testing, and communicating findings in professional science writing. We will work with a number of different animal species in both the field and the lab. Students should be aware that animals do not always "behave" in discrete, three-hour time periods, and that some work may have to be arranged outside of the regularly assigned class period. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y–110Y. Prerequisite or corequisite: BIOL 261.
The molecular and genomic basis of life is at the heart of modern biology. In this course, we will learn techniques and explore research questions at the forefront of molecular research, focusing on the mechanisms by which the information of the genome is expressed to form the functional molecules of living cells and organisms. The processes of DNA replication, recombination and repair, transcription, and translation are discussed in the context of current research, frequently using primary literature. The function of genes and the regulation and measurement of gene expression are treated in depth. Students analyze and publish interactive tutorials on the structure and function of macromolecules. This course presumes a strong background in the basics of protein structure/function, central dogma processes, fundamental molecular techniques for manipulating nucleic acids and proteins and general chemistry. Note: For further study of the function of proteins, membranes and cellular processes, the complementary course BIOL 266 (Cell Biology) is recommended. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 116 and CHEM 122 and 123 or CHEM 124 and 126.
This skills lab course teaches fundamental methods of gene isolation, manipulation and characterization. An assortment of the following techniques will be covered: the isolation of DNA and RNA from tissues and cells; recombinant DNA technique; expression of genes in heterologous systems; the polymerase chain reaction (PCR); measurement of gene expression, and bioinformatics and sequence analysis. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y and either CHEM 122 and 123 or CHEM 124 and 126. Prerequisite or corequisite: BIOL 263 or permission of instructor.
This course introduces students to the wide variety of questions being asked by researchers in this exciting field and the approaches they are taking to answer these questions. This course complements BIOL 263 in content, concentrating on the nongenomic aspects of the cell. We will cover topics such as biological membranes and ion channels, cell organelles and their function, cell regulation, and intercellular and intracellular communication. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 116. Prerequisite or corequisite: CHEM 121 or 122. Generally offered every other year..
This laboratory course is designed to complement BIOL 266. The topics covered in the laboratory will expose the student to some of the standard techniques used in modern cell biology. The laboratories also will illustrate some of the fundamental ideas of the field. Instead of covering a wide variety of techniques and preparations superficially, we will concentrate on a select few, covering them in greater depth. Some topics that will be covered are protein separation, cell permeability and cell motility. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y. Prerequisite or corequisite: BIOL 266. Generally offered every other year.
This course will examine the ecological theory and practice of restoration ecology through lectures, class discussion, field trips and a class project on restoration design. The science of ecosystem restoration has grown dramatically over the past decades, emerging as an active subdiscipline of biology. The challenges of restoration are many and include our incomplete understanding of the complexity of ecosystems and the limits this places on our ability to predict ecosystem response to restoration efforts. Restoration ecology spans a range of activities and scales, ranging from the systematic, long-term restoration of major ecosystems such as the Everglades or the Colorado River watershed, to small-scale restoration projects such as the prairie and wetland restoration projects at Kenyon's Brown Family Environmental Center. This course we will focus on the causes of ecosystem degradation, methods to quantify ecosystem response, the application of concepts such as ecological integrity, ecosystem resilience and alternative stable states. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 115 and a 200-level biology course or permission of instructor.
Cell signaling, a molecular choreography, allows cells to respond to changes in their internal and external environment. This vast and exciting field of study underpins one of the pillars of life, the ability of organisms to sense and respond to changing conditions. This course introduces students to the major players in signal transduction and how they coordinate to mount an effective cellular response, with a focus on techniques used to study pathways. Examples of particular pathways examined may include chemotaxis in bacteria, mating response in yeast, energy homeostasis in animals and phototropism in plants. Students are expected to actively participate in class discussions of assigned readings and critically evaluate primary literature. As a final project, students teach their peers about a pathway of interest. BIOL 263 is recommended but not required. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: CHEM 121 or equivalent, BIOL 116, any 200-level biology course and junior or senior standing.
This course addresses the mechanisms responsible for building multicellular eukaryotic organisms, framed in the context of the evolution of developmental processes and patterns. We will explore the similarities in molecular and cellular mechanisms governing development across broad groups of organisms, as well as the changes in these processes that have resulted in novel forms. Class discussions will be based on primary literature as well as other texts, with particular attention devoted to the experimental basis for current scientific understanding. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 116 and any 200-level biology course. Generally offered every other year.
This course will examine current biochemical, evolutionary and ecological topics in photosynthesis. Our understanding of photosynthetic processes is increasing rapidly, and in this class we will read primary literature and book chapters to examine selected topics in depth. Topics will include evolution of oxygenic photosynthesis, light acquisition, Rubisco carboxylation and oxygenation, and the impact of environmental drivers such as temperature and CO2 on carbon gain in agricultural and unmanaged ecosystems. While the focus will be on plant photosynthesis, we will also explore cyanobacterial and algal systems to illustrate the photosynthetic diversity found in nature. This counts toward the upper-level organismal biology/physiology or cellular/molecular biology requirement for the major. Prerequisite: BIOL 115 and at least one 200-level biology lecture class.
This is a comprehensive course in the large-scale history and dynamics of the biosphere. The course will focus on ecoinformatics and macroecology, using computational approaches to describe and explain general patterns in the distribution, abundance and functioning of organisms. Special attention will be given to geographical patterns of biodiversity and their basis in both ecological (dispersal, competition) and evolutionary (speciation, extinction) processes. The course will also examine the large-scale interactions between Homo sapiens and the rest of the biosphere. Most of the reading will be drawn from recent primary literature. Students will develop data science skills including data archiving and manipulation, literate coding, visualization and analysis, reproducibility, and code repositories. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 228, 241, 251, 253 or 261 or permission of instructor.
This course examines the mechanisms by which chemical contaminants impact molecular, organismal and ecological systems. Topics include sources and movement of contaminants in the environment, basics of toxicity testing, molecular mechanisms of contaminant effects and ecological risk assessment. The course uses readings from standard texts, the popular press and primary literature, placing particular emphasis on current experimental approaches and problem-solving methods. Rather than surveying a wide variety of topics superficially, the course will concentrate on selected issues and stories that illustrate important contemporary issues in environmental toxicology. This course emphasizes molecular biology techniques and counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 116 and at least one 200-level biology lecture course. Generally offered every other year.
The world around us is teeming with microorganisms, many of which are capable bringing us to our knees. Despite this looming devastation, most individuals manage to remain healthy, not succumbing to the ever-present pathogens in our environment. Immunology is the study of the cellular and molecular mechanisms employed to protect against infection. The cells and organs of the immune system are many and, consistent with this diversity, play many important roles in health and development. Every day, components of the immune system must identify harmful invaders and eliminate them, a process that requires critical distinction between host vs. harmful cells. They also provide long-lived protection against recurring infection. In this class, we will embark on a journey through the immune system. We will explore the mechanisms employed by the innate immune system to provide first response to foreign invaders. Additionally, we will dissect the complex processes by which cells of the adaptive immune system recognize and respond to pathogens and establish long-term immunity. Lastly, we will explore the consequences of impaired immune response in a variety of contexts. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 255, 263, 266 or 238. Generally offered every other year.
This course is designed to introduce students to the study of freshwater ecosystems, including lakes, streams and wetlands. Human activities have had profound impacts on freshwater life and an understanding of the dynamics of freshwater systems is instrumental in determining how to protect and restore these habitats. We will examine the physical, chemical and biological factors influencing biological diversity and productivity and will emphasize the application of ecological principles to study these systems. Possible topics include the effects of agricultural run-off and eutrophication; erosion resulting from human development; the introduction of non-native species; toxic contaminants; and restoration techniques. Standard texts as well as primary literature will be used. This counts toward the upper-level environmental biology requirement for the major. Prerequisite: BIOL 115 or equivalent and at least one 200- or 300-level biology lecture course. Generally offered every other year.
In this laboratory course, students will employ methods used in the study of freshwater ecosystems. It is designed to complement either BIOL 251 or BIOL 352. Students will learn to identify freshwater organisms, quantify biological, chemical and physical parameters that affect these organisms, and design ecological experiments. Throughout the course, laboratories will emphasize hypothesis testing, quantitative methods and experimental design. Field trips will be taken to local natural habitats and many lab periods will be spent doing fieldwork. This counts toward the upper-level laboratory requirement. Prerequisite: BIOL 109Y-110Y. Prerequisite or corequisite: BIOL 251 or 352 or permission of instructor. Generally offered every other year.
The study of the nervous system is a field that has experienced explosive growth in the past few decades. This course is designed to introduce the student to modern neurobiology by covering the basic foundations as well as the latest results from current research. Subject matter will range from the biophysics of membranes and ion channels, through sensory integration and simple behaviors, to the development of the nervous system. Rather than cover a wide variety of topics superficially, we will concentrate more time on selected topics that illustrate the current thinking of neurobiologists. Experience in math and/or physics is strongly recommended. This counts toward the upper-level organismal biology/physiology requirement for the major. Prerequisite: BIOL 116 and at least one biology lecture course at the 200-level or one 300-level NEUR lecture course. Generally offered every other year.
This is a laboratory designed to complement the lecture course. We will concentrate either on the different intracellular and extracellular electrophysiological recording techniques commonly used in the field to illustrate both motor and sensory aspects of nervous-system function or on the molecular aspects of nervous system function molecular. We will conclude with a series of independent projects that will bring together the ideas covered earlier in the course. Prerequisite: BIOL 109Y-110Y. This counts toward the upper level laboratory requirement. Prerequisite or corequisite: BIOL 358. Generally offered every other year.
In this course, students examine the form and function of viruses through current research papers and through documentaries on viral disease. Specific viruses are examined in depth, exemplifying their roles in human and animal health, biotechnology and global ecology. Topics may include human papillomavirus, a DNA virus causing cancer; hepatitis C virus, a growing cause of liver failure; Ebola virus, an RNA virus with extraordinary virulence; influenza virus, an RNA virus of humans and animals with pandemic potential; and human immunodeficiency virus (HIV), the cause of AIDS. We investigate the use of HIV-derived viral vectors for gene therapy. This counts toward the upper-level cellular/molecular biology requirement for the major. Prerequisite: BIOL 238, 243, 263, 266 or 358. Generally offered every other year.
This combined discussion and laboratory course aims to develop abilities for asking sound research questions, designing reasonable scientific approaches to answer such questions, and performing experiments to test both the design and the question. We consider how to assess difficulties and limitations in experimental strategies due to design, equipment, organism selected and so on. The course provides a detailed understanding of selected modern research equipment. Students select their own research problems in consultation with one or more biology faculty members. This course is designed both for those who plan to undertake honors research in their senior year and for those who are not doing honors but want practical research experience. A student can begin the course in either semester. If a year of credit is earned, it may be applied toward one laboratory requirement for the major in biology. This course is repeatable for credit. Prerequisite: BIOL 109Y–110Y and 116 and permission of instructor.
This course provides the student with the opportunity to pursue an independent investigation of a topic of special interest not covered, or not covered in depth, in the current curriculum. The investigation, designed in consultation with the chosen faculty mentor, may be designed to earn .25 or .5 unit of credit in a semester. BIOL 393 is ordinarily is a library-oriented investigation. (For laboratory-oriented independent research, see BIOL 385.) Normally, students receive credit for no more than two semesters of individual study. Individual study does not fulfill the natural science diversification requirement, nor does it count toward the requirements for the major. Because students must enroll for individual studies by the end of the seventh day of classes, they should begin discussion of the proposed individual study well in advance, preferably the semester before, so that there is time to devise a syllabus and seek departmental approval before the established deadline.
In this capstone seminar, students explore current research topics in biology by writing a mini-review on a topic of their choice. In doing so, students analyze and integrate information from research articles they connect specific studies to broader biological questions and propose future work that refines and extends prior studies. Students communicate their insights in both oral and written formats. Assignments include short essays, student presentations, a general-audience piece and peer review. This course counts toward the upper-level lecture course requirement for the biology major. Prerequisite: senior standing and biology or molecular biology major.
This course offers an in-depth research experience. Prior to enrollment in this course, students are expected to complete at least one semester of BIOL 385 and participate in the Summer Science Scholars program. Two semesters of BIOL 385 are recommended. Emphasis is on completion of the research project. Students also are instructed in poster production and produce one or more posters of their honors work for presentation at Kenyon and possibly at outside meetings. There will be oral progress reports, and students draft the Introduction and Methods section of the honors thesis. The letter grade is determined by the instructor and project advisor in consultation with the department. Students must have an overall GPA of at least 3.33 and a GPA of 3.33 in biology. Permission of instructor and department chair required. Prerequisite: BIOL 385 and permission of project advisor and department chair.
This course continues the honors research project and gives attention to scientific writing and the mechanics of producing a thesis. A thesis is required and is defended orally to an outside examiner. The letter grade is determined by the instructor and project advisor in consultation with the department. Permission of instructor and department chair required. Prerequisite: BIOL 385 and 497.